A small amount of fat usually don't pose a problem for me, sometimes I chill the napthta including the fats, they will precipitate on bottom of the naptha - then I decant the naphtha and proceed to freeze precipitation.
The fat on bottom can be extracted with more napththa.
Sometimes it is possible to trap fats by adding a drying agent (e.g. Drierite) to the extracted naphta - it will remove traces of water and keep the fatty sludge on bottom so it will be easier to decant the naphtha. It might sacrifice some spice though...