Smoking seeds is not extremely dangerous. It's just foul. The seeds may pop when burning, which is an annoying complication.
If you want to smoke rue extract, don't use the plain watery extract, but prepare the freebase form. It is much better for smoking. Read about some of the rue extraction teks on the nexus wiki. Also there's a wealth of information on changa on the forum. Changa is dmt and harmala infused onto herbs.